nsv5300644
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:74,339
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 635 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 635 SVs from 69 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5300644 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000009.12 | Chr9 | 133,603,607 (-10, +9) | 133,677,945 (-3, +2) | ||
| nsv5300644 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 136,468,729 (-10, +9) | 136,543,067 (-3, +2) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16745346 | duplication | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16745346 | Submitted genomic | NC_000009.12:g.(13 3603597_133603616) _(133677942_133677 947)dup | GRCh38.p13 | NC_000009.12 | Chr9 | 133,603,607 (-10, +9) | 133,677,945 (-3, +2) | ||
| nssv16745346 | Remapped | Perfect | NC_000009.11:g.(13 6468719_136468738) _(136543064_136543 069)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 136,468,729 (-10, +9) | 136,543,067 (-3, +2) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16745346 | <0.001 |