nsv5304878
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:3,143
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 645 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 645 SVs from 59 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5304878 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000015.10 | Chr15 | 30,932,069 (-234, +8) | 30,935,211 (-10, +245) | ||
| nsv5304878 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 31,224,272 (-234, +8) | 31,227,414 (-10, +245) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16753994 | duplication | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16753994 | Submitted genomic | NC_000015.10:g.(30 931835_30932077)_( 30935201_30935456) dup | GRCh38.p13 | NC_000015.10 | Chr15 | 30,932,069 (-234, +8) | 30,935,211 (-10, +245) | ||
| nssv16753994 | Remapped | Perfect | NC_000015.9:g.(312 24038_31224280)_(3 1227404_31227659)d up | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 31,224,272 (-234, +8) | 31,227,414 (-10, +245) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16753994 | <0.001 |