nsv5310020
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,595
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 166 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 166 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5310020 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000002.12 | Chr2 | 197,465,519 (-10, +263) | 197,467,113 (-325, +9) | ||
| nsv5310020 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 198,330,243 (-10, +263) | 198,331,837 (-325, +9) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16759044 | deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16759044 | Submitted genomic | NC_000002.12:g.(19 7465509_197465782) _(197466788_197467 122)del | GRCh38.p13 | NC_000002.12 | Chr2 | 197,465,519 (-10, +263) | 197,467,113 (-325, +9) | ||
| nssv16759044 | Remapped | Perfect | NC_000002.11:g.(19 8330233_198330506) _(198331512_198331 846)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 198,330,243 (-10, +263) | 198,331,837 (-325, +9) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16759044 | <0.001 |