nsv5310696
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:240,248
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 727 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 727 SVs from 63 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv5310696 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000004.12 | Chr4 | 101,475,005 (-23, +23) | 101,715,252 (-25, +22) | ||
nsv5310696 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 102,396,162 (-23, +23) | 102,636,409 (-25, +22) |
Variant Call Information
Variant Call ID | Type | Method | Analysis |
---|---|---|---|
nssv16773420 | deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv16773420 | Submitted genomic | NC_000004.12:g.(10 1474982_101475028) _(101715227_101715 274)del | GRCh38.p13 | NC_000004.12 | Chr4 | 101,475,005 (-23, +23) | 101,715,252 (-25, +22) | ||
nssv16773420 | Remapped | Perfect | NC_000004.11:g.(10 2396139_102396185) _(102636384_102636 431)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 102,396,162 (-23, +23) | 102,636,409 (-25, +22) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
Variant Call ID | Allele Frequency (AF) |
---|---|
nssv16773420 | <0.001 |