nsv5314979
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,937
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 107 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 107 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5314979 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000005.10 | Chr5 | 140,624,634 (-11, +155) | 140,626,570 (-64, +10) | ||
| nsv5314979 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 140,004,219 (-11, +155) | 140,006,155 (-64, +10) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16757146 | deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16757146 | Submitted genomic | NC_000005.10:g.(14 0624623_140624789) _(140626506_140626 580)del | GRCh38.p13 | NC_000005.10 | Chr5 | 140,624,634 (-11, +155) | 140,626,570 (-64, +10) | ||
| nssv16757146 | Remapped | Perfect | NC_000005.9:g.(140 004208_140004374)_ (140006091_1400061 65)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 140,004,219 (-11, +155) | 140,006,155 (-64, +10) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16757146 | 0.004 |