nsv5317862
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:532
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 98 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 98 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5317862 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000006.12 | Chr6 | 52,520,560 (-28, +29) | 52,521,091 (-27, +22) | ||
| nsv5317862 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 52,385,358 (-28, +29) | 52,385,889 (-27, +22) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16771699 | deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16771699 | Submitted genomic | NC_000006.12:g.(52 520532_52520589)_( 52521064_52521113) del | GRCh38.p13 | NC_000006.12 | Chr6 | 52,520,560 (-28, +29) | 52,521,091 (-27, +22) | ||
| nssv16771699 | Remapped | Perfect | NC_000006.11:g.(52 385330_52385387)_( 52385862_52385911) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 52,385,358 (-28, +29) | 52,385,889 (-27, +22) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16771699 | <0.001 |