nsv5322524
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 140 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 142 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 130 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 132 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 16 SVs from 11 studies. See in: genome view
Overlapping variant regions from other studies: 17 SVs from 11 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv5322524 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000011.10 | Chr11 | 49,951,798 | 49,951,798 | + | ||
| nsv5322524 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000011.10 | Chr11 | 49,953,152 | 49,953,152 | + | ||
| nsv5322524 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000011.9 | Chr11 | 49,973,350 | 49,973,350 | + |
| nsv5322524 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000011.9 | Chr11 | 49,974,704 | 49,974,704 | + |
| nsv5322524 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003571045.1 | Chr11|NW_0 03571045.1 | 110,703 | 110,703 | + |
| nsv5322524 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003571045.1 | Chr11|NW_0 03571045.1 | 112,057 | 112,057 | + |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16740672 | intrachromosomal translocation | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv16740672 | Submitted genomic | GRCh38.p13 | NC_000011.10 | Chr11 | 49,951,798 | 49,951,798 | + | ||
| nssv16740672 | Submitted genomic | GRCh38.p13 | NC_000011.10 | Chr11 | 49,953,152 | 49,953,152 | + | ||
| nssv16740672 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003571045.1 | Chr11|NW_0 03571045.1 | 110,703 | 110,703 | + |
| nssv16740672 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003571045.1 | Chr11|NW_0 03571045.1 | 112,057 | 112,057 | + |
| nssv16740672 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000011.9 | Chr11 | 49,973,350 | 49,973,350 | + |
| nssv16740672 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000011.9 | Chr11 | 49,974,704 | 49,974,704 | + |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16740672 | <0.001 |