nsv5325718
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:mobile element deletion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,783
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 255 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 255 SVs from 53 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5325718 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000002.12 | Chr2 | 201,281,935 | 201,284,717 | ||
| nsv5325718 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 202,146,658 | 202,149,440 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16759300 | sva deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16759300 | Submitted genomic | NC_000002.12:g.201 281935_201284717de l | GRCh38.p13 | NC_000002.12 | Chr2 | 201,281,935 | 201,284,717 | ||
| nssv16759300 | Remapped | Perfect | NC_000002.11:g.202 146658_202149440de l | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 202,146,658 | 202,149,440 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16759300 | 0.59 |