nsv5328659
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:mobile element deletion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,108
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 173 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 173 SVs from 56 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5328659 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000006.12 | Chr6 | 19,764,894 (-138, +605) | 19,771,001 (-627, +167) | ||
| nsv5328659 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 19,765,125 (-138, +605) | 19,771,232 (-627, +167) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16774415 | line1 deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16774415 | Submitted genomic | NC_000006.12:g.(19 764756_19765499)_( 19770374_19771168) del | GRCh38.p13 | NC_000006.12 | Chr6 | 19,764,894 (-138, +605) | 19,771,001 (-627, +167) | ||
| nssv16774415 | Remapped | Perfect | NC_000006.11:g.(19 764987_19765730)_( 19770605_19771399) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 19,765,125 (-138, +605) | 19,771,232 (-627, +167) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16774415 | 0.353 |