nsv5328704
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:mobile element deletion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,114
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 238 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 238 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5328704 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000005.10 | Chr5 | 15,906,440 (-4, +3) | 15,912,553 (-10, +7) | ||
| nsv5328704 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 15,906,549 (-4, +3) | 15,912,662 (-10, +7) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16764726 | line1 deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16764726 | Submitted genomic | NC_000005.10:g.(15 906436_15906443)_( 15912543_15912560) del | GRCh38.p13 | NC_000005.10 | Chr5 | 15,906,440 (-4, +3) | 15,912,553 (-10, +7) | ||
| nssv16764726 | Remapped | Perfect | NC_000005.9:g.(159 06545_15906552)_(1 5912652_15912669)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 15,906,549 (-4, +3) | 15,912,662 (-10, +7) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16764726 | <0.001 |