nsv5329498
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 149 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 185 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 149 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 185 SVs from 43 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv5329498 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000002.12 | Chr2 | 119,659,503 | 119,659,503 | - | ||
| nsv5329498 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000002.12 | Chr2 | 119,660,919 | 119,660,919 | - | ||
| nsv5329498 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 120,417,079 | 120,417,079 | - |
| nsv5329498 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 120,418,495 | 120,418,495 | - |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16748563 | intrachromosomal translocation | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv16748563 | Submitted genomic | GRCh38.p13 | NC_000002.12 | Chr2 | 119,659,503 | 119,659,503 | - | ||
| nssv16748563 | Submitted genomic | GRCh38.p13 | NC_000002.12 | Chr2 | 119,660,919 | 119,660,919 | - | ||
| nssv16748563 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 120,417,079 | 120,417,079 | - |
| nssv16748563 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 120,418,495 | 120,418,495 | - |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16748563 | 0.63 |