Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv5381868

Organism: Homo sapiens

Study:nstd186 (NCBI Curated Common Structural Variants)
Variant Type:mobile element deletion
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:354

Description:nsv4775228 from Abel et. al 2020. For a full list of variants now included in nstd186, refer to the mapping file provided here.

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 166 SVs from 43 studies. See in: genome view

Remapped(Score: Perfect):43,806,161-43,806,514

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5381868	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	43,806,161	43,806,514
nsv5381868	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000013.10	Chr13	44,380,297	44,380,650

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16871057	alu deletion	Curated	Curated

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16871057	Remapped	Perfect	NC_000013.11:g.438 06161_43806514del	GRCh38.p12	First Pass	NC_000013.11	Chr13	43,806,161	43,806,514
nssv16871057	Submitted genomic		NC_000013.10:g.443 80297_44380650del	GRCh37 (hg19)		NC_000013.10	Chr13	44,380,297	44,380,650

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16871057	0.301	5064	16834

You are here: NCBI