nsv5383263
- Organism: Homo sapiens
- Study:nstd186 (NCBI Curated Common Structural Variants)
- Variant Type:mobile element deletion
- Method Type:Curated
- Submitted on:GRCh37
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:308
- Description:nsv4775128 from Abel et. al 2020. For a full list of variants now included in nstd186, refer to the mapping file provided here.
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 113 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 113 SVs from 43 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5383263 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 94,275,572 | 94,275,879 |
| nsv5383263 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 94,669,348 | 94,669,655 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16880309 | alu deletion | Curated | Curated |
| nssv16880705 | alu deletion | Curated | Curated |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16880309 | Remapped | Perfect | NC_000012.12:g.942 75572_94275879del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 94,275,572 | 94,275,879 |
| nssv16880705 | Remapped | Perfect | NC_000012.12:g.942 75572_94275879del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 94,275,572 | 94,275,879 |
| nssv16880309 | Submitted genomic | NC_000012.11:g.946 69348_94669655del | GRCh37 (hg19) | NC_000012.11 | Chr12 | 94,669,348 | 94,669,655 | ||
| nssv16880705 | Submitted genomic | NC_000012.11:g.946 69348_94669655del | GRCh37 (hg19) | NC_000012.11 | Chr12 | 94,669,348 | 94,669,655 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16880309 | 0.263 | 7687 | 29246 |
| nssv16880705 | 0.29 | 4878 | 16834 |