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dbVar

Database of genomic structural variation

nsv5392880

Organism: Homo sapiens

Study:nstd186 (NCBI Curated Common Structural Variants)
Variant Type:copy number variation
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:53

Description:nsv4838527 from Abel et. al 2020. For a full list of variants now included in nstd186, refer to the mapping file provided here.

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 193 SVs from 41 studies. See in: genome view

Remapped(Score: Perfect):779,930-779,982

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5392880	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	779,930	779,982
nsv5392880	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	779,930	779,982

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16882324	deletion	Curated	Curated

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16882324	Remapped	Perfect	NC_000011.10:g.779 930_779982del	GRCh38.p12	First Pass	NC_000011.10	Chr11	779,930	779,982
nssv16882324	Submitted genomic		NC_000011.9:g.7799 30_779982del	GRCh37 (hg19)		NC_000011.9	Chr11	779,930	779,982

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16882324	0.02	342	16834

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