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dbVar

Database of genomic structural variation

nsv5393527

Organism: Homo sapiens

Study:nstd186 (NCBI Curated Common Structural Variants)
Variant Type:mobile element deletion
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,718

Description:nsv5033612 from Abel et. al 2020. For a full list of variants now included in nstd186, refer to the mapping file provided here.

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 145 SVs from 48 studies. See in: genome view

Remapped(Score: Perfect):31,968,967-31,971,684

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5393527	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	31,968,967	31,971,684
nsv5393527	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000010.10	Chr10	32,257,895	32,260,612

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16878578	sva deletion	Curated	Curated

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16878578	Remapped	Perfect	NC_000010.11:g.319 68967_31971684del	GRCh38.p12	First Pass	NC_000010.11	Chr10	31,968,967	31,971,684
nssv16878578	Submitted genomic		NC_000010.10:g.322 57895_32260612del	GRCh37 (hg19)		NC_000010.10	Chr10	32,257,895	32,260,612

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16878578	0.504	14735	29242

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