nsv5393540
- Organism: Homo sapiens
- Study:nstd186 (NCBI Curated Common Structural Variants)
- Variant Type:mobile element deletion
- Method Type:Curated
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,646
- Description:nsv4879103 from Abel et. al 2020. For a full list of variants now included in nstd186, refer to the mapping file provided here.
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 127 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 127 SVs from 50 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv5393540 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 95,946,578 | 95,949,223 |
nsv5393540 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 96,340,356 | 96,343,001 |
Variant Call Information
Variant Call ID | Type | Method | Analysis |
---|---|---|---|
nssv16872159 | sva deletion | Curated | Curated |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv16872159 | Remapped | Perfect | NC_000012.12:g.959 46578_95949223del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 95,946,578 | 95,949,223 |
nssv16872159 | Submitted genomic | NC_000012.11:g.963 40356_96343001del | GRCh37 (hg19) | NC_000012.11 | Chr12 | 96,340,356 | 96,343,001 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
---|---|---|---|
nssv16872159 | 0.441 | 7428 | 16834 |