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dbVar

Database of genomic structural variation

nsv5393574

Organism: Homo sapiens

Study:nstd186 (NCBI Curated Common Structural Variants)
Variant Type:mobile element deletion
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:6,110

Description:nsv5032487 from Abel et. al 2020. For a full list of variants now included in nstd186, refer to the mapping file provided here.

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 202 SVs from 58 studies. See in: genome view

Remapped(Score: Perfect):90,675,647-90,681,756

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5393574	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	90,675,647	90,681,756
nsv5393574	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	91,596,798	91,602,907

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16873748	line1 deletion	Curated	Curated

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16873748	Remapped	Perfect	NC_000004.12:g.906 75647_90681756del	GRCh38.p12	First Pass	NC_000004.12	Chr4	90,675,647	90,681,756
nssv16873748	Submitted genomic		NC_000004.11:g.915 96798_91602907del	GRCh37 (hg19)		NC_000004.11	Chr4	91,596,798	91,602,907

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16873748	0.884	25839	29216

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