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dbVar

Database of genomic structural variation

nsv5393807

Organism: Homo sapiens

Study:nstd186 (NCBI Curated Common Structural Variants)
Variant Type:mobile element deletion
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:6,138

Description:nsv4875685 from Abel et. al 2020. For a full list of variants now included in nstd186, refer to the mapping file provided here.

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 375 SVs from 44 studies. See in: genome view

Remapped(Score: Perfect):187,050,524-187,056,661

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5393807	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	187,050,524	187,056,661
nsv5393807	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	187,971,678	187,977,815

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16881092	line1 deletion	Curated	Curated

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16881092	Remapped	Perfect	NC_000004.12:g.187 050524_187056661de l	GRCh38.p12	First Pass	NC_000004.12	Chr4	187,050,524	187,056,661
nssv16881092	Submitted genomic		NC_000004.11:g.187 971678_187977815de l	GRCh37 (hg19)		NC_000004.11	Chr4	187,971,678	187,977,815

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16881092	0.499	8393	16834

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