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dbVar

Database of genomic structural variation

nsv5393809

Organism: Homo sapiens

Study:nstd186 (NCBI Curated Common Structural Variants)
Variant Type:mobile element deletion
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,726

Description:nsv4879004 from Abel et. al 2020. For a full list of variants now included in nstd186, refer to the mapping file provided here.

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 171 SVs from 40 studies. See in: genome view

Remapped(Score: Perfect):128,953,533-128,956,258

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5393809	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	128,953,533	128,956,258
nsv5393809	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	128,672,376	128,675,101

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16872387	sva deletion	Curated	Curated

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16872387	Remapped	Perfect	NC_000003.12:g.128 953533_128956258de l	GRCh38.p12	First Pass	NC_000003.12	Chr3	128,953,533	128,956,258
nssv16872387	Submitted genomic		NC_000003.11:g.128 672376_128675101de l	GRCh37 (hg19)		NC_000003.11	Chr3	128,672,376	128,675,101

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16872387	0.056	945	16834

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