nsv5402813
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:66
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 98 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 96 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 15 SVs from 11 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5402813 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000010.11 | Chr10 | 115,728,999 | 115,729,064 | ||
| nsv5402813 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000010.10 | Chr10 | 117,488,509 | 117,488,574 |
| nsv5402813 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004775432.1 | Chr10|NW_0 04775432.1 | 702,463 | 702,528 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17041141 | alu insertion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17041141 | Submitted genomic | NC_000010.11:g.115 728999_115729064in s279 | GRCh38 (hg38) | NC_000010.11 | Chr10 | 115,728,999 | 115,729,064 | ||
| nssv17041141 | Remapped | Perfect | NW_004775432.1:g.7 02463_702528ins279 | GRCh37.p13 | First Pass | NW_004775432.1 | Chr10|NW_0 04775432.1 | 702,463 | 702,528 |
| nssv17041141 | Remapped | Perfect | NC_000010.10:g.117 488509_117488574in s279 | GRCh37.p13 | Second Pass | NC_000010.10 | Chr10 | 117,488,509 | 117,488,574 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv17041141 | <0.001 | 1 | 6404 |