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dbVar

Database of genomic structural variation

nsv5412439

Organism: Homo sapiens

Study:nstd206 (Byrska-Bishop et al. 2022)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:52

Publication(s):Byrska-Bishop et al. 2022

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 97 SVs from 24 studies. See in: genome view

Submitted genomic110,002,612-110,002,663

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5412439	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000004.12	Chr4	110,002,612	110,002,663
nsv5412439	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	110,923,768	110,923,819

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16954922	alu insertion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16954922	Submitted genomic		NC_000004.12:g.110 002612_110002663in s280	GRCh38 (hg38)		NC_000004.12	Chr4	110,002,612	110,002,663
nssv16954922	Remapped	Perfect	NC_000004.11:g.110 923768_110923819in s280	GRCh37.p13	First Pass	NC_000004.11	Chr4	110,923,768	110,923,819

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16954922	0.004	24	6404

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