nsv5418877
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:84,895
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 562 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 562 SVs from 68 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5418877 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 9,259,168 (-241, +74) | 9,344,062 (-84, +180) | ||
| nsv5418877 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 9,319,227 (-241, +74) | 9,404,121 (-84, +180) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16890199 | duplication | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16890199 | Submitted genomic | NC_000001.11:g.(92 58927_9259242)_(93 43978_9344242)dup | GRCh38 (hg38) | NC_000001.11 | Chr1 | 9,259,168 (-241, +74) | 9,344,062 (-84, +180) | ||
| nssv16890199 | Remapped | Perfect | NC_000001.10:g.(93 18986_9319301)_(94 04037_9404301)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 9,319,227 (-241, +74) | 9,404,121 (-84, +180) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16890199 | 0.002 | 13 | 6404 |