nsv5436781
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:16,558
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 259 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 262 SVs from 42 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5436781 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 235,348,512 (-51, +19) | 235,365,069 (-49, +40) | ||
| nsv5436781 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 235,511,827 (-51, +19) | 235,528,384 (-49, +40) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16896572 | duplication | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16896572 | Submitted genomic | NC_000001.11:g.(23 5348461_235348531) _(235365020_235365 109)dup | GRCh38 (hg38) | NC_000001.11 | Chr1 | 235,348,512 (-51, +19) | 235,365,069 (-49, +40) | ||
| nssv16896572 | Remapped | Perfect | NC_000001.10:g.(23 5511776_235511846) _(235528335_235528 424)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 235,511,827 (-51, +19) | 235,528,384 (-49, +40) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16896572 | <0.001 | 3 | 6404 |