nsv5447881
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:16,001
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 290 SVs from 45 studies. See in: genome view
Overlapping variant regions from other studies: 290 SVs from 45 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5447881 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000004.12 | Chr4 | 5,763,552 | 5,779,552 | ||
| nsv5447881 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 5,765,279 | 5,781,279 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16945779 | deletion | Sequencing | Sequence alignment |
| nssv16945780 | duplication | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16945779 | Submitted genomic | NC_000004.12:g.576 3552_5779552del | GRCh38 (hg38) | NC_000004.12 | Chr4 | 5,763,552 | 5,779,552 | ||
| nssv16945780 | Submitted genomic | NC_000004.12:g.576 3552_5779552dup | GRCh38 (hg38) | NC_000004.12 | Chr4 | 5,763,552 | 5,779,552 | ||
| nssv16945779 | Remapped | Perfect | NC_000004.11:g.576 5279_5781279del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 5,765,279 | 5,781,279 |
| nssv16945780 | Remapped | Perfect | NC_000004.11:g.576 5279_5781279dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 5,765,279 | 5,781,279 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16945779 | <0.001 | 6 | 6404 |
| nssv16945780 | 0.001 | 7 | 6404 |