nsv5493106
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:26,001
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 267 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 45 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5493106 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000010.11 | Chr10 | 50,086,368 | 50,112,368 | ||
| nsv5493106 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004504302.1 | Chr10|NW_0 04504302.1 | 265,543 | 291,543 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17034662 | duplication | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17034662 | Submitted genomic | NC_000010.11:g.500 86368_50112368dup | GRCh38 (hg38) | NC_000010.11 | Chr10 | 50,086,368 | 50,112,368 | ||
| nssv17034662 | Remapped | Perfect | NW_004504302.1:g.2 65543_291543dup | GRCh37.p13 | First Pass | NW_004504302.1 | Chr10|NW_0 04504302.1 | 265,543 | 291,543 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv17034662 | <0.001 | 1 | 6402 |