nsv5520299
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,739
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 172 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 172 SVs from 34 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5520299 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000020.11 | Chr20 | 523,836 (-94, +314) | 525,574 (-312, +69) | ||
| nsv5520299 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000020.10 | Chr20 | 504,480 (-94, +314) | 506,218 (-312, +69) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17730199 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17730199 | Submitted genomic | NC_000020.11:g.(52 3742_524150)_(5252 62_525643)del | GRCh38 (hg38) | NC_000020.11 | Chr20 | 523,836 (-94, +314) | 525,574 (-312, +69) | ||
| nssv17730199 | Remapped | Perfect | NC_000020.10:g.(50 4386_504794)_(5059 06_506287)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 504,480 (-94, +314) | 506,218 (-312, +69) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv17730199 | <0.001 | 4 | 6404 |