nsv5522972
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,427
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 158 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 156 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5522972 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000017.11 | Chr17 | 44,042,897 (-337, +95) | 44,045,323 (-70, +238) | ||
| nsv5522972 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000017.10 | Chr17 | 42,120,265 (-337, +95) | 42,122,691 (-70, +238) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17713270 | duplication | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17713270 | Submitted genomic | NC_000017.11:g.(44 042560_44042992)_( 44045253_44045561) dup | GRCh38 (hg38) | NC_000017.11 | Chr17 | 44,042,897 (-337, +95) | 44,045,323 (-70, +238) | ||
| nssv17713270 | Remapped | Perfect | NC_000017.10:g.(42 119928_42120360)_( 42122621_42122929) dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 42,120,265 (-337, +95) | 42,122,691 (-70, +238) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv17713270 | <0.001 | 1 | 6404 |