nsv5531642
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,114
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 91 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 91 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5531642 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000017.11 | Chr17 | 28,267,541 (-70, +5) | 28,268,654 (-40, +69) | ||
| nsv5531642 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000017.10 | Chr17 | 26,594,567 (-70, +5) | 26,595,680 (-40, +69) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17712344 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17712344 | Submitted genomic | NC_000017.11:g.(28 267471_28267546)_( 28268614_28268723) del | GRCh38 (hg38) | NC_000017.11 | Chr17 | 28,267,541 (-70, +5) | 28,268,654 (-40, +69) | ||
| nssv17712344 | Remapped | Perfect | NC_000017.10:g.(26 594497_26594572)_( 26595640_26595749) del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 26,594,567 (-70, +5) | 26,595,680 (-40, +69) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv17712344 | <0.001 | 2 | 6404 |