nsv5533906
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:485
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 132 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 130 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5533906 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000017.11 | Chr17 | 39,441,868 (-30, +20) | 39,442,352 (-20, +6) | ||
| nsv5533906 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000017.10 | Chr17 | 37,598,121 (-30, +20) | 37,598,605 (-20, +6) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17713045 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17713045 | Submitted genomic | NC_000017.11:g.(39 441838_39441888)_( 39442332_39442358) del | GRCh38 (hg38) | NC_000017.11 | Chr17 | 39,441,868 (-30, +20) | 39,442,352 (-20, +6) | ||
| nssv17713045 | Remapped | Perfect | NC_000017.10:g.(37 598091_37598141)_( 37598585_37598611) del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 37,598,121 (-30, +20) | 37,598,605 (-20, +6) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv17713045 | <0.001 | 2 | 6404 |