nsv5554599
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:46
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 264 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 264 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 20 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5554599 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 52,861,672 | 52,861,717 | ||
| nsv5554599 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 52,890,701 | 52,890,746 |
| nsv5554599 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004070877.1 | ChrX|NW_00 4070877.1 | 2,574,787 | 2,574,832 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17737007 | alu insertion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17737007 | Submitted genomic | NC_000023.11:g.528 61672_52861717ins2 79 | GRCh38 (hg38) | NC_000023.11 | ChrX | 52,861,672 | 52,861,717 | ||
| nssv17737007 | Remapped | Perfect | NW_004070877.1:g.2 574787_2574832ins2 79 | GRCh37.p13 | First Pass | NW_004070877.1 | ChrX|NW_00 4070877.1 | 2,574,787 | 2,574,832 |
| nssv17737007 | Remapped | Perfect | NC_000023.10:g.528 90701_52890746ins2 79 | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 52,890,701 | 52,890,746 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv17737007 | 0.363 | 2327 | 6404 |