nsv5562729
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:55,062
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 774 SVs from 89 studies. See in: genome view
Overlapping variant regions from other studies: 774 SVs from 89 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5562729 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 25,318,634 (-394, +861) | 25,373,695 (-367, +518) | ||
| nsv5562729 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 25,645,125 (-394, +861) | 25,700,186 (-367, +518) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16900200 | inversion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16900200 | Submitted genomic | NC_000001.11:g.(25 318240_25319495)_( 25373328_25374213) inv | GRCh38 (hg38) | NC_000001.11 | Chr1 | 25,318,634 (-394, +861) | 25,373,695 (-367, +518) | ||
| nssv16900200 | Remapped | Perfect | NC_000001.10:g.(25 644731_25645986)_( 25699819_25700704) inv | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 25,645,125 (-394, +861) | 25,700,186 (-367, +518) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16900200 | 0.008 | 50 | 6404 |