nsv5564425
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:731,543
- Description:NC_000002.11:g.(?_108604612)_(109336154_?)dup AND Familial acute necrotizing encephalopathy
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1843 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 1843 SVs from 95 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv5564425 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 107,988,156 | 108,719,698 |
nsv5564425 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 108,604,612 | 109,336,154 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
---|---|---|---|---|---|---|---|
nssv17059198 | duplication | Multiple | Multiple | ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 3; IIAE3; Encephalopathy, acute, infection-induced, 3, suceptibility to; Familial acute necrotizing encephalopathy | Uncertain significance | ClinVar | RCV001374166.2, VCV001064222.2 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv17059198 | Remapped | Perfect | NC_000002.12:g.(?_ 107988156)_(108719 698_?)dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 107,988,156 | 108,719,698 |
nssv17059198 | Submitted genomic | NC_000002.11:g.(?_ 108604612)_(109336 154_?)dup | GRCh37 (hg19) | NC_000002.11 | Chr2 | 108,604,612 | 109,336,154 |
No validation data were submitted for this variant
Clinical Assertions
Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
---|---|---|---|---|---|---|---|
nssv17059198 | GRCh37: NC_000002.11:g.(?_108604612)_(109336154_?)dup | duplication | germline | ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 3; IIAE3; Encephalopathy, acute, infection-induced, 3, suceptibility to; Familial acute necrotizing encephalopathy | Uncertain significance | ClinVar | RCV001374166.2, VCV001064222.2 |