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dbVar

Database of genomic structural variation

nsv5672773

Organism: Homo sapiens

Study:nstd102 (Clinical Structural Variants)
Variant Type:copy number variation
Method Type:Multiple
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:8,829

Description:NC_000011.9:g.(?_108151710)_(108160538_?)del AND Ataxia-telangiectasia syndrome
Publication(s):Bird et al. 1998, Gasser et al. 2009, Gatti et al. 1999, van de Warrenburg et al. 2014

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 122 SVs from 28 studies. See in: genome view

Remapped(Score: Perfect):108,280,983-108,289,811

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv5672773	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	108,280,983	108,289,811
nsv5672773	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	108,151,710	108,160,538

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv17172552	deletion	Multiple	Multiple	ATAXIA-TELANGIECTASIA; AT; Ataxia-Telangiectasia; Ataxia-telangiectasia; Ataxia-telangiectasia syndrome; See individual phenotypes in OMIM allelic variants	Pathogenic	ClinVar	RCV001381597.4, VCV001069668.4

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv17172552	Remapped	Perfect	NC_000011.10:g.(?_ 108280983)_(108289 811_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	108,280,983	108,289,811
nssv17172552	Submitted genomic		NC_000011.9:g.(?_1 08151710)_(1081605 38_?)del	GRCh37 (hg19)		NC_000011.9	Chr11	108,151,710	108,160,538

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv17172552	GRCh37: NC_000011.9:g.(?_108151710)_(108160538_?)del	deletion	germline	ATAXIA-TELANGIECTASIA; AT; Ataxia-Telangiectasia; Ataxia-telangiectasia; Ataxia-telangiectasia syndrome; See individual phenotypes in OMIM allelic variants	Pathogenic	ClinVar	RCV001381597.4, VCV001069668.4

No genotype data were submitted for this variant

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