nsv5672872
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:126,644
- Description:NC_000017.10:g.(?_29422314)_(29548957_?)del AND Neurofibromatosis, type 1
- Publication(s):Chen et al. 2010, Dome et al. 2003, Friedman et al. 1998, Lenders et al. 2014, Radtke et al. 2007, Robson et al. 2010, Trepanier et al. 2004
- ClinVar: RCV001384697.1
- ClinVar: VCV001072077.1
- GeneReviews: NBK1109
- MONDO: 0018975
- MedGen: C0027831
- OMIM: 162200
- OMIM: 613113.0001
- OMIM: 613113.0002
- OMIM: 613113.0003
- OMIM: 613113.0004
- OMIM: 613113.0005
- OMIM: 613113.0006
- OMIM: 613113.0007
- OMIM: 613113.0008
- OMIM: 613113.0009
- OMIM: 613113.0012
- OMIM: 613113.0013
- OMIM: 613113.0014
- OMIM: 613113.0015
- OMIM: 613113.0016
- OMIM: 613113.0021
- OMIM: 613113.0022
- OMIM: 613113.0023
- OMIM: 613113.0024
- OMIM: 613113.0025
- OMIM: 613113.0026
- OMIM: 613113.0027
- OMIM: 613113.0029
- OMIM: 613113.0030
- OMIM: 613113.0031
- OMIM: 613113.0032
- OMIM: 613113.0037
- OMIM: 613113.0038
- OMIM: 613113.0040
- OMIM: 613113.0041
- OMIM: 613113.0042
- OMIM: 613113.0043
- OMIM: 613113.0044
- OMIM: 613113.0046
- Orphanet: 636
- PubMed: 15604628
- PubMed: 17636453
- PubMed: 20065170
- PubMed: 20301288
- PubMed: 20301471
- PubMed: 20664475
- PubMed: 24893135
- Overlapping Genes
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 419 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 419 SVs from 52 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5672872 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 31,095,296 | 31,221,939 |
| nsv5672872 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000017.10 | Chr17 | 29,422,314 | 29,548,957 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv17172834 | deletion | Multiple | Multiple | NEUROFIBROMATOSIS, TYPE I; NF1; Neurofibromatosis 1; Neurofibromatosis type 1; Neurofibromatosis, type 1; See individual phenotypes in OMIM allelic variants | Pathogenic | ClinVar | RCV001384697.1, VCV001072077.1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17172834 | Remapped | Perfect | NC_000017.11:g.(?_ 31095296)_(3122193 9_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 31,095,296 | 31,221,939 |
| nssv17172834 | Submitted genomic | NC_000017.10:g.(?_ 29422314)_(2954895 7_?)del | GRCh37 (hg19) | NC_000017.10 | Chr17 | 29,422,314 | 29,548,957 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv17172834 | GRCh37: NC_000017.10:g.(?_29422314)_(29548957_?)del | deletion | germline | NEUROFIBROMATOSIS, TYPE I; NF1; Neurofibromatosis 1; Neurofibromatosis type 1; Neurofibromatosis, type 1; See individual phenotypes in OMIM allelic variants | Pathogenic | ClinVar | RCV001384697.1, VCV001072077.1 |