nsv5673380
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:974
- Description:NC_000019.9:g.(?_11217231)_(11218204_?)del AND Familial hypercholesterolemia
- Publication(s):Youngblom et al. 2014
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 79 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 79 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5673380 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 11,106,555 | 11,107,528 |
| nsv5673380 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 11,217,231 | 11,218,204 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv17171939 | deletion | Multiple | Multiple | Familial Hypercholesterolemia; Familial hypercholesterolemia; Hypercholesterolemia, familial | Pathogenic | ClinVar | RCV001390563.5, VCV001076614.5 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17171939 | Remapped | Perfect | NC_000019.10:g.(?_ 11106555)_(1110752 8_?)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 11,106,555 | 11,107,528 |
| nssv17171939 | Submitted genomic | NC_000019.9:g.(?_1 1217231)_(11218204 _?)del | GRCh37 (hg19) | NC_000019.9 | Chr19 | 11,217,231 | 11,218,204 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv17171939 | GRCh37: NC_000019.9:g.(?_11217231)_(11218204_?)del | deletion | germline | Familial Hypercholesterolemia; Familial hypercholesterolemia; Hypercholesterolemia, familial | Pathogenic | ClinVar | RCV001390563.5, VCV001076614.5 |