nsv5675980
- Organism: Homo sapiens
- Study:nstd211 (Chuang et al. 2021)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Description:Insertion of a Alu mobile element relative to the reference
- Publication(s):Chuang et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 109 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 109 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5675980 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000005.10 | Chr5 | 163,446,471 | 163,446,471 | ||
| nsv5675980 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 162,873,477 | 162,873,477 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17177611 | alu insertion | Sequencing | Other |
| nssv17226349 | alu insertion | Sequencing | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17177611 | Submitted genomic | NC_000005.10:g.163 446471_163446472in s199 | GRCh38 (hg38) | NC_000005.10 | Chr5 | 163,446,471 | 163,446,471 | ||
| nssv17226349 | Submitted genomic | NC_000005.10:g.163 446471_163446472in s279 | GRCh38 (hg38) | NC_000005.10 | Chr5 | 163,446,471 | 163,446,471 | ||
| nssv17177611 | Remapped | Perfect | NC_000005.9:g.1628 73477_162873478ins 199 | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 162,873,477 | 162,873,477 |
| nssv17226349 | Remapped | Perfect | NC_000005.9:g.1628 73477_162873478ins 279 | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 162,873,477 | 162,873,477 |