nsv5679238
- Organism: Homo sapiens
- Study:nstd211 (Chuang et al. 2021)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Description:Insertion of a Alu mobile element relative to the reference
- Publication(s):Chuang et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 157 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 162 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5679238 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 233,173,659 | 233,173,659 | ||
| nsv5679238 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 233,309,405 | 233,309,405 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17192791 | alu insertion | Sequencing | Other |
| nssv17207025 | alu insertion | Sequencing | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17192791 | Submitted genomic | NC_000001.11:g.233 173659_233173660in s252 | GRCh38 (hg38) | NC_000001.11 | Chr1 | 233,173,659 | 233,173,659 | ||
| nssv17207025 | Submitted genomic | NC_000001.11:g.233 173659_233173660in s262 | GRCh38 (hg38) | NC_000001.11 | Chr1 | 233,173,659 | 233,173,659 | ||
| nssv17192791 | Remapped | Perfect | NC_000001.10:g.233 309405_233309406in s252 | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 233,309,405 | 233,309,405 |
| nssv17207025 | Remapped | Perfect | NC_000001.10:g.233 309405_233309406in s262 | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 233,309,405 | 233,309,405 |