nsv5731058
- Organism: Homo sapiens
- Study:nstd211 (Chuang et al. 2021)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Description:Insertion of a L1 mobile element relative to the reference
- Publication(s):Chuang et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 79 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 77 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 13 SVs from 10 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5731058 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000011.10 | Chr11 | 70,873,820 | 70,873,820 | ||
| nsv5731058 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000011.9 | Chr11 | 70,719,925 | 70,719,925 |
| nsv5731058 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004070871.1 | Chr11|NW_0 04070871.1 | 418,033 | 418,033 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17252439 | line1 insertion | Sequencing | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17252439 | Submitted genomic | NC_000011.10:g.708 73820_70873821ins1 761 | GRCh38 (hg38) | NC_000011.10 | Chr11 | 70,873,820 | 70,873,820 | ||
| nssv17252439 | Remapped | Perfect | NW_004070871.1:g.4 18033_418034ins176 1 | GRCh37.p13 | First Pass | NW_004070871.1 | Chr11|NW_0 04070871.1 | 418,033 | 418,033 |
| nssv17252439 | Remapped | Perfect | NC_000011.9:g.7071 9925_70719926ins17 61 | GRCh37.p13 | Second Pass | NC_000011.9 | Chr11 | 70,719,925 | 70,719,925 |