nsv5828204
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:12,605
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 944 SVs from 78 studies. See in: genome view
Overlapping variant regions from other studies: 761 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 273 SVs from 41 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5828204 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 145,767,739 | 145,780,343 | ||
| nsv5828204 | Remapped | Good | GRCh37.p13 | Primary Assembly | Second Pass | NC_000001.10 | Chr1 | 145,654,736 | 145,667,336 |
| nsv5828204 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 2,583,152 | 2,595,756 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17454446 | copy number variation | Sequencing | Sequence alignment | 0 |
| nssv17468976 | copy number variation | Sequencing | Sequence alignment | 2 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17454446 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 145,767,739 | 145,780,343 | ||
| nssv17468976 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 145,767,739 | 145,780,343 | ||
| nssv17454446 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 2,583,152 | 2,595,756 |
| nssv17468976 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 2,583,152 | 2,595,756 |
| nssv17454446 | Remapped | Good | GRCh37.p13 | Second Pass | NC_000001.10 | Chr1 | 145,654,736 | 145,667,336 |
| nssv17468976 | Remapped | Good | GRCh37.p13 | Second Pass | NC_000001.10 | Chr1 | 145,654,736 | 145,667,336 |