nsv5828207
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,405
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 873 SVs from 71 studies. See in: genome view
Overlapping variant regions from other studies: 686 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 238 SVs from 34 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5828207 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 145,797,169 | 145,799,573 | ||
| nsv5828207 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000001.10 | Chr1 | 145,635,505 | 145,637,909 |
| nsv5828207 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 2,612,582 | 2,614,986 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17454150 | copy number variation | Sequencing | Sequence alignment | 2 |
| nssv17458502 | copy number variation | Sequencing | Sequence alignment | 0 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17454150 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 145,797,169 | 145,799,573 | ||
| nssv17458502 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 145,797,169 | 145,799,573 | ||
| nssv17454150 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 2,612,582 | 2,614,986 |
| nssv17458502 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 2,612,582 | 2,614,986 |
| nssv17454150 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000001.10 | Chr1 | 145,635,505 | 145,637,909 |
| nssv17458502 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000001.10 | Chr1 | 145,635,505 | 145,637,909 |