nsv5841448
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:7,342
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 522 SVs from 76 studies. See in: genome view
Overlapping variant regions from other studies: 516 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 211 SVs from 32 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5841448 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000005.10 | Chr5 | 140,835,373 | 140,842,714 | ||
| nsv5841448 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000005.9 | Chr5 | 140,214,958 | 140,222,299 |
| nsv5841448 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004775428.1 | Chr5|NW_00 4775428.1 | 70,549 | 77,890 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17495594 | copy number variation | Sequencing | Sequence alignment | 0 |
| nssv17495595 | copy number variation | Sequencing | Sequence alignment | 2 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17495594 | Submitted genomic | GRCh38 (hg38) | NC_000005.10 | Chr5 | 140,835,373 | 140,842,714 | ||
| nssv17495595 | Submitted genomic | GRCh38 (hg38) | NC_000005.10 | Chr5 | 140,835,373 | 140,842,714 | ||
| nssv17495594 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_004775428.1 | Chr5|NW_00 4775428.1 | 70,549 | 77,890 |
| nssv17495595 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_004775428.1 | Chr5|NW_00 4775428.1 | 70,549 | 77,890 |
| nssv17495594 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000005.9 | Chr5 | 140,214,958 | 140,222,299 |
| nssv17495595 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000005.9 | Chr5 | 140,214,958 | 140,222,299 |