nsv5841449
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:9,066
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 693 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 688 SVs from 78 studies. See in: genome view
Overlapping variant regions from other studies: 312 SVs from 37 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv5841449 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000005.10 | Chr5 | 140,850,106 | 140,859,171 | ||
nsv5841449 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000005.9 | Chr5 | 140,229,691 | 140,238,756 |
nsv5841449 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004775428.1 | Chr5|NW_00 4775428.1 | 85,282 | 94,347 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Copy number |
---|---|---|---|---|
nssv17495598 | copy number variation | Sequencing | Sequence alignment | 0 |
nssv17495599 | copy number variation | Sequencing | Sequence alignment | 2 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|
nssv17495598 | Submitted genomic | GRCh38 (hg38) | NC_000005.10 | Chr5 | 140,850,106 | 140,859,171 | ||
nssv17495599 | Submitted genomic | GRCh38 (hg38) | NC_000005.10 | Chr5 | 140,850,106 | 140,859,171 | ||
nssv17495598 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_004775428.1 | Chr5|NW_00 4775428.1 | 85,282 | 94,347 |
nssv17495599 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_004775428.1 | Chr5|NW_00 4775428.1 | 85,282 | 94,347 |
nssv17495598 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000005.9 | Chr5 | 140,229,691 | 140,238,756 |
nssv17495599 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000005.9 | Chr5 | 140,229,691 | 140,238,756 |