nsv5857685
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,500
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 201 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 207 SVs from 45 studies. See in: genome view
Overlapping variant regions from other studies: 45 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5857685 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000010.11 | Chr10 | 50,065,332 | 50,067,831 | ||
| nsv5857685 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000010.10 | Chr10 | 51,825,092 | 51,827,591 |
| nsv5857685 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004504302.1 | Chr10|NW_0 04504302.1 | 244,507 | 247,006 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17463181 | copy number variation | Sequencing | Sequence alignment | 0 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17463181 | Submitted genomic | GRCh38 (hg38) | NC_000010.11 | Chr10 | 50,065,332 | 50,067,831 | ||
| nssv17463181 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_004504302.1 | Chr10|NW_0 04504302.1 | 244,507 | 247,006 |
| nssv17463181 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000010.10 | Chr10 | 51,825,092 | 51,827,591 |