nsv5861039
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,200
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 180 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 175 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 18 SVs from 10 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5861039 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000009.12 | Chr9 | 130,136,123 | 130,138,322 | ||
| nsv5861039 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000009.11 | Chr9 | 132,898,402 | 132,900,601 |
| nsv5861039 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004070869.1 | Chr9|NW_00 4070869.1 | 5,553 | 7,752 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17511501 | copy number variation | Sequencing | Sequence alignment | 2 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17511501 | Submitted genomic | GRCh38 (hg38) | NC_000009.12 | Chr9 | 130,136,123 | 130,138,322 | ||
| nssv17511501 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_004070869.1 | Chr9|NW_00 4070869.1 | 5,553 | 7,752 |
| nssv17511501 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000009.11 | Chr9 | 132,898,402 | 132,900,601 |