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dbVar

Database of genomic structural variation

nsv586129

Organism: Homo sapiens

Study:nstd54 (Cooper et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:23,358

Publication(s):Cooper et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 466 SVs from 73 studies. See in: genome view

Remapped(Score: Good):45,726,581-45,749,938

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv586129	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000020.11	Chr20	45,726,581	45,749,938
nsv586129	Remapped	Good	GRCh37.p13	Primary Assembly	First Pass	NC_000020.10	Chr20	44,355,220	44,378,577
nsv586129	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000020.9	Chr20	43,788,634	43,811,984

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1150949	copy number loss	HGDP00795	SNP array	SNP genotyping analysis	nssv1153629, nssv1153690
nssv1150950	copy number loss	HGDP00797	SNP array	SNP genotyping analysis	8
nssv1150951	copy number loss	HGDP00799	SNP array	SNP genotyping analysis	5
nssv1150952	copy number loss	HGDP00806	SNP array	SNP genotyping analysis	10
nssv1150953	copy number loss	HGDP01079	SNP array	SNP genotyping analysis	8
nssv1150954	copy number loss	HGDP01376	SNP array	SNP genotyping analysis	nssv1151681, nssv1155306, nssv1174360

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1150949	Remapped	Good	NC_000020.11:g.(?_ 45726581)_(4574993 8_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	45,726,581	45,749,938
nssv1150950	Remapped	Good	NC_000020.11:g.(?_ 45726581)_(4574993 8_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	45,726,581	45,749,938
nssv1150951	Remapped	Good	NC_000020.11:g.(?_ 45726581)_(4574993 8_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	45,726,581	45,749,938
nssv1150952	Remapped	Good	NC_000020.11:g.(?_ 45726581)_(4574993 8_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	45,726,581	45,749,938
nssv1150953	Remapped	Good	NC_000020.11:g.(?_ 45726581)_(4574993 8_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	45,726,581	45,749,938
nssv1150954	Remapped	Good	NC_000020.11:g.(?_ 45726581)_(4574993 8_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	45,726,581	45,749,938
nssv1150949	Remapped	Good	NC_000020.10:g.(?_ 44355220)_(4437857 7_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	44,355,220	44,378,577
nssv1150950	Remapped	Good	NC_000020.10:g.(?_ 44355220)_(4437857 7_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	44,355,220	44,378,577
nssv1150951	Remapped	Good	NC_000020.10:g.(?_ 44355220)_(4437857 7_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	44,355,220	44,378,577
nssv1150952	Remapped	Good	NC_000020.10:g.(?_ 44355220)_(4437857 7_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	44,355,220	44,378,577
nssv1150953	Remapped	Good	NC_000020.10:g.(?_ 44355220)_(4437857 7_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	44,355,220	44,378,577
nssv1150954	Remapped	Good	NC_000020.10:g.(?_ 44355220)_(4437857 7_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	44,355,220	44,378,577
nssv1150949	Submitted genomic		NC_000020.9:g.(?_4 3788634)_(43811984 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	43,788,634	43,811,984
nssv1150950	Submitted genomic		NC_000020.9:g.(?_4 3788634)_(43811984 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	43,788,634	43,811,984
nssv1150951	Submitted genomic		NC_000020.9:g.(?_4 3788634)_(43811984 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	43,788,634	43,811,984
nssv1150952	Submitted genomic		NC_000020.9:g.(?_4 3788634)_(43811984 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	43,788,634	43,811,984
nssv1150953	Submitted genomic		NC_000020.9:g.(?_4 3788634)_(43811984 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	43,788,634	43,811,984
nssv1150954	Submitted genomic		NC_000020.9:g.(?_4 3788634)_(43811984 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	43,788,634	43,811,984

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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