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dbVar

Database of genomic structural variation

nsv5880282

Organism: Homo sapiens

Study:nstd209 (Almarri et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:100

Publication(s):Almarri et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 375 SVs from 25 studies. See in: genome view

Submitted genomic72,426,665-72,426,764

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5880282	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000023.11	ChrX	72,426,665	72,426,764
nsv5880282	Remapped	Perfect	GRCh37.p13	Primary Assembly	Second Pass	NC_000023.10	ChrX	71,646,515	71,646,614
nsv5880282	Remapped	Perfect	GRCh37.p13	PATCHES	First Pass	NW_004070882.1	ChrX\|NW_00 4070882.1	115,682	115,781

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17460407	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17460407	Submitted genomic		NC_000023.11:g.724 26665_72426764del	GRCh38 (hg38)		NC_000023.11	ChrX	72,426,665	72,426,764
nssv17460407	Remapped	Perfect	NW_004070882.1:g.1 15682_115781del	GRCh37.p13	First Pass	NW_004070882.1	ChrX\|NW_00 4070882.1	115,682	115,781
nssv17460407	Remapped	Perfect	NC_000023.10:g.716 46515_71646614del	GRCh37.p13	Second Pass	NC_000023.10	ChrX	71,646,515	71,646,614

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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