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dbVar

Database of genomic structural variation

nsv5881056

Organism: Homo sapiens

Study:nstd209 (Almarri et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:234

Publication(s):Almarri et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 559 SVs from 39 studies. See in: genome view

Submitted genomic149,605,273-149,605,506

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5881056	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000023.11	ChrX	149,605,273	149,605,506
nsv5881056	Remapped	Good	GRCh37.p13	Primary Assembly	Second Pass	NC_000023.10	ChrX	148,686,956	148,687,193
nsv5881056	Remapped	Perfect	GRCh37.p13	PATCHES	First Pass	NW_004070890.2	ChrX\|NW_00 4070890.2	5,129,671	5,129,904

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17430765	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17430765	Submitted genomic		NC_000023.11:g.149 605273_149605506de l	GRCh38 (hg38)		NC_000023.11	ChrX	149,605,273	149,605,506
nssv17430765	Remapped	Perfect	NW_004070890.2:g.5 129671_5129904del	GRCh37.p13	First Pass	NW_004070890.2	ChrX\|NW_00 4070890.2	5,129,671	5,129,904
nssv17430765	Remapped	Good	NC_000023.10:g.148 686956_148687193de l	GRCh37.p13	Second Pass	NC_000023.10	ChrX	148,686,956	148,687,193

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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