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dbVar

Database of genomic structural variation

nsv5882057

Organism: Homo sapiens

Study:nstd209 (Almarri et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,789,621

Publication(s):Almarri et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 4624 SVs from 88 studies. See in: genome view

Submitted genomic52,862,950-55,652,570

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5882057	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000023.11	ChrX	52,862,950	55,652,570
nsv5882057	Remapped	Pass	GRCh37.p13	Primary Assembly	Second Pass	NC_000023.10	ChrX	52,891,979	54,424,077
nsv5882057	Remapped	Pass	GRCh37.p13	PATCHES	First Pass	NW_004070877.1	ChrX\|NW_00 4070877.1	2,576,065	4,110,759

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17459230	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17459230	Submitted genomic		NC_000023.11:g.528 62950_55652570del	GRCh38 (hg38)		NC_000023.11	ChrX	52,862,950	55,652,570
nssv17459230	Remapped	Pass	NW_004070877.1:g.2 576065_4110759del	GRCh37.p13	First Pass	NW_004070877.1	ChrX\|NW_00 4070877.1	2,576,065	4,110,759
nssv17459230	Remapped	Pass	NC_000023.10:g.528 91979_54424077del	GRCh37.p13	Second Pass	NC_000023.10	ChrX	52,891,979	54,424,077

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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