nsv5884798
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:3,530
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 144 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 142 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 9 SVs from 6 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5884798 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000017.11 | Chr17 | 42,004,008 | 42,007,537 | ||
| nsv5884798 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000017.10 | Chr17 | 40,156,026 | 40,159,555 |
| nsv5884798 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003571052.1 | Chr17|NW_0 03571052.1 | 290,650 | 294,179 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17473785 | copy number variation | Sequencing | Sequence alignment | 2 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17473785 | Submitted genomic | GRCh38 (hg38) | NC_000017.11 | Chr17 | 42,004,008 | 42,007,537 | ||
| nssv17473785 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003571052.1 | Chr17|NW_0 03571052.1 | 290,650 | 294,179 |
| nssv17473785 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000017.10 | Chr17 | 40,156,026 | 40,159,555 |