nsv5892550
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:68
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 127 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 127 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5892550 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000003.12 | Chr3 | 154,136,211 | 154,136,278 | ||
| nsv5892550 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 153,854,000 | 153,854,067 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17413709 | deletion | Sequencing | Sequence alignment |
| nssv17419659 | duplication | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17413709 | Submitted genomic | NC_000003.12:g.154 136211_154136278de l | GRCh38 (hg38) | NC_000003.12 | Chr3 | 154,136,211 | 154,136,278 | ||
| nssv17419659 | Submitted genomic | NC_000003.12:g.154 136211_154136278du p | GRCh38 (hg38) | NC_000003.12 | Chr3 | 154,136,211 | 154,136,278 | ||
| nssv17413709 | Remapped | Perfect | NC_000003.11:g.153 854000_153854067de l | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 153,854,000 | 153,854,067 |
| nssv17419659 | Remapped | Perfect | NC_000003.11:g.153 854000_153854067du p | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 153,854,000 | 153,854,067 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv17419659 | 1 | 24 | 24 |